The goal of sciReptor is to be a comprehensive solution for the processing, use and storage of single-cell AIRR-seq (scAIRR-seq) data and its integration with flow cytometry (FC) and receptor affinity (RA) data.
sciReptor was originally developed [Imkeller_2016] to process and analyse data from Matrix PCR [Busse_2014] experiments. Note that sciReptor focuses exclusively on single-cell data, if you need to process bulk AIRR-seq data, you will find recommendations on the AIRR-C Software WG website.
It consists out of multiple components:
Database backend and schema
Data processing pipeline
API to access the database via HTTP
Tools for data import, export and analysis